Format Conversion
Combine FASTA
EMBL to FASTA
EMBL Feature Extractor
EMBL Trans Extractor
Filter DNA
Filter Protein
GenBank to FASTA
GenBank Feature Extractor
GenBank Trans Extractor
One to Three
Range Extractor DNA
Range Extractor Protein
Reverse Complement
Split Codons
Split FASTA
Three to One
Window Extractor DNA
Window Extractor Protein
Sequence Analysis
Codon Plot
Codon Usage
CpG Islands
DNA Molecular Weight
DNA Pattern Find
DNA Stats
Fuzzy Search DNA
Fuzzy Search Protein
Ident and Sim
Multi Rev Trans
Mutate for Digest
ORF Finder
Pairwise Align Codons
Pairwise Align DNA
Pairwise Align Protein
PCR Primer Stats
PCR Products
Protein GRAVY
Protein Isoelectric Point
Protein Molecular Weight
Protein Pattern Find
Protein Stats
Restriction Digest
Restriction Summary
Reverse Translate
Translate
Sequence Figures
Color Align Conservation
Color Align Properties
Group DNA
Group Protein
Primer Map
Restriction Map
Translation Map
Random Sequences
Mutate DNA
Mutate Protein
Random Coding DNA
Random DNA Sequence
Random DNA Regions
Random Protein Sequence
Random Protein Regions
Sample DNA
Sample Protein
Shuffle DNA
Shuffle Protein
Miscellaneous
IUPAC codes
Genetic codes
Browser compatibility
Mirror this site
Use this site off-line
About this site
Acknowledgments
Reference
The Sequence Manipulation Suite Copyright © 2000, 2004 Paul Stothard. Send questions and comments to stothard@ualberta.ca
Home
Fuzzy Search Protein
- Sequence Manipulation Suite
Fuzzy Search Protein accepts a protein sequence along with a query sequence and returns sites that are identical or similar to the query.
Enter the sequence to search (in raw sequence or FASTA format) into the text area below. Input limit is 2000 characters.
>test sequence GKGKYGLEAFNGKFVQTDGQLAGTANEQTQFTLIFTSGHLVLRDNNGRHLGVDSGTRVLK SSKPGLTKANYFILEDSCPQGAFEFGGKYASLKQGEDVSFKLLVDEDIEDTETFQLEFVE TDKYAIRVCDPKKNSRDAKFWKTVAAGIQANGNSKDQTDCQFSVEYNGNDMHVRAPGGKY
Enter the query sequence into the text area below. Input limit is 30 characters.
Please check the
browser compatibility
page before using this program.
Use the following parameters to specify how hits are scored, and to control which hits are returned.
Scoring matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Gap penalty
5
4
3
2
1
0
-1
-2
-3
-4
-5
Report the the top
40
30
20
10
9
8
7
6
5
4
3
2
1
hits.
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Thu Aug 27 17:17:36 2015